Chapter 1: Introduction to Environmental Sciences (Part 1)
Chapter 1: Introduction to Environmental Sciences (Part 1)
The Chemical and Biological Foundations of LifeĀ
Some of the most abundant elements in living organisms
Carbon
Hydrogen
NitrogenĀ
Oxygen
Sulfur
PhosphorusĀ
These elements above create fundamental components of living matter;
Nucleic acid
Proteins
Carbohydrates
Lipids
The building blocks which are very important for unique structures of atoms that make up moleculesĀ
These allow the formation of cells, tissues, organ systems, and entire organisms
Life is made up of matter
The matter is any sort of substance that uses up space and has mass
Elements are unique forms of matter with very specific properties (chemical and physical)
These can not be broken down into any smaller substances
There are 118 chemical elements 92 occur naturally
The remaining 26 elements are synthesized in laboratories and are unstableĀ
The 5 elements common to living organisms are
Oxygen (O)
Carbon (C)
Hydrogen (H)
Nitrogen (N)
Phosphorus (P)
In a world where non-living organisms reside elements are found in different proportionsĀ
Some elements are common to living organisms and are rare on the earth as a wholeĀ
Ex.Ā
The atmosphere is rich in nitrogen and oxygen but contains little carbon and hydrogen whilst the earthās crust does contain oxygen and small amounts of hydrogen it has little nitrogen and carbonĀ
Despite all the differences, all elements and chemical reactions between them obey the same chemical and physical laws where they are a part of the living or non-living worldĀ
Chart of the approximate percentage of elements in living organisms (bacteria, humans) compared to no living woldĀ
(trace = less than 1%)
ElementsĀ | BiosphereĀ | AtmosphereĀ | LithosphereĀ |
OxygenĀ | 65% | 21% | 46% |
CarbonĀ | 18% | TraceĀ | TraceĀ |
HydrogenĀ | 10% | TraceĀ | TraceĀ |
NitrogenĀ | 3% | 78% | TraceĀ |
PhosphorusĀ | TraceĀ | TraceĀ | >30% |
The Structure of an AtomĀ
Atoms are the smallest unit of matter that retains all the chemical properties found of an elementĀ
Ex.Ā
One gold atom has all of the properties of gold in that it is a sold metal at room temperature. One gold coin is simply a very large number of golf atoms molded into the shape of a coin and containing small amounts of other elements known as impurities.Ā
Gold atoms canāt be broken down into anything smaller whilst retaining the properties (of gold)
Atoms are composed of 2 regions
Nucleus - the center of the atom and which contains the protons and neutrons
Outermost - holds its elections in orbit around the nucleusĀ
Atoms contain protons, neutrons and electrons among other subatomic particlesĀ
The only exception is hydrogen which is only made up of one proton and one electron with no neutrons
Here is a simple diagram of an atom
They have protons and neutrons in the nucleus and electrons surrounding the nucleusĀ
Protons and neutrons have approx. the same mass about 1.67(10-24)Ā
Scientists define this about of mass as one atomic mass unit (AMU)
Although they do have different electric charges
Protons are positively chargedĀ
Neutrons are negativelyĀ
Therefore the number of neutrons in an atom does contribute to its mass but not its chargeĀ
Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Charge Ā Ā Ā Ā Ā Mass (AMU) Ā Ā Ā Location in an atomĀ | |||
ProtonĀ | +1 | 1 | NucleusĀ |
NeutronĀ | 0 | 1 | NucleusĀ |
ElectronĀ | -1 | 0 | OrbitalsĀ |
Electrons are much smaller in mass than protons
Weighing online 9.11(10-28) grams (or 1/1800)AMU
They donāt really contribute to the elements overall massĀ
Electrons contribute a lot towards the charge of the atomĀ
Each electron has a negative charge which is equal to the positive charge of a proton
In neutral atoms (uncharged) the number of electrons orbiting the nucleus equal to the number of protons in the nucleus
In such atoms, positive and negative charged cancel each other out which can lead to an atom with no net chargeĀ
Protons neutrons and electrons are mostly empty space which is 99%
Electrons that surround all atoms are negatively charged and negative charges repel each otherĀ
When atoms gain or lose electrons, ions are formedĀ
These are charged forms of atomsĀ
Positive ions (sodium Na+) lose one or more electronsĀ
Negatively charged ions (chloride (C1-), gain one or more electronsĀ
MoleculesĀ
These are formed when two or more atoms join together through chemical bonds to form a unit of matterĀ
Ex.Ā
CO2Ā is a molecule because it is made up of one carbon atoms and 2 oxygen atomsĀ
Some ions molecules are charged due to the ions they containĀ
Ex.Ā
Nitrate (NO3-) - common source for plants
It contains one nitrogen atom and three oxygen atoms and has an overallĀ
Ā charge of negative oneĀ
IsotopesĀThese are different forms of an element that have the same number of protons but different Ā number of neutrons
Elements such as carbon, potassium and uranium have naturally occurring isotopesĀ
Carbon-12 contains six protons, six neutrons and six electrons, therefore its mass number is 12 (six protons + six neutrons)Ā
These are alternate forms of carbon are isotopesĀ
Radioisotopes/ radioactive isotopesĀ
emit neutrons, protons, and electrons and attain more stable atomic configurations (lower level of potential energy)
Radioactive decay describe the energy loss that occurs when an unstable atomās nucleus release radiationĀ
Ex.Carbon-14 losing neutrons to become carbon-12
CarbonĀ
The basic functional unit of life is a cellĀ
All organisms are made up of one or more cells
MacromoleculesĀ
Cells are made of many complex moleculesĀ
Proteins
Nucleic acids (RNA and DNA)
CarbohydratesĀ
LipidsĀ
These are a subset of organic molecules that are very important for lifeĀ
A fundamental component of all macromolecules is carbonĀ
Carbon has unique properties that allow it to form covalent bonds with as many as four different atomsĀ
Carbon is also a versatile element for basic structural components of macromoleculesĀ
HydrocarbonsĀ
These are organic molecules that consist entirely of carbon and hydrogenĀ
Ex.Ā
Methane (CH4) - these covalent bonds between atoms in hydrocarbons store great amounts of energy and is released when molecules are oxidized (burned) methane is an excellent fuel and is also the simplest hydrocarbon moleculeĀ
This is a carbon molecule that shows a carbon atom in the middle and four hydrogen atoms (different) surrounding it.Ā
Methane has a tetrahedral geometry with four hydrogen atoms spaced 109.5Ā° apart.Ā
This three-dimensional shape of macromolecules is critical to how they function.
Hydrocarbons may exist as linear carbon chains, carbon rings and combinations of both
Biological molecules
Life on earth is made of four primary major classes of biological molecules (biomolecules)Ā
Carbohydrates
Lipids
Proteins
Nucleic acidsĀ
CarbohydratesĀ
One type of macromolecule (especially when it comes to what we eat)
Essential to our diet (grains, fruits and vegetables are all natural sources of carbohydrates)Ā
They provide energy to our bodies (mainly through glucose)Ā
Glucose is a simple sugar that is a component of starch and an ingredient that is common in many foods
Carbohydrates have important functions in humans, animals and plants
Its formula - (CH2O)nĀ -Ā nĀ is the number of carbons in the moleculeĀ
Ratio form - 1:2:1 (carbon to hydrogen to oxygen)
This formula explains the origin of the term ācarbohydratesā
āCarboā the components of carbon
āHydrateā the components of waterĀ
GlucoseĀ
The chemical formula for glucose is C6H12O6
During cellular respiration, energy is released from glucoseĀ
Help make adenosine triphosphate (ATP)
Plants synthesize glucose using carbon dioxide and waterĀ
In turn, glucose is required for energy for the plantĀ
The excess is stored as starch that is a breakdown of larger molecules by cells (catabolized)Ā
By humans and other animals that feed on plantsĀ
The starch is stored in different parts of the plant including roots and seeds
The starch in the seeds provides food for the embryo as it germinates and can provide food for animals and humans
LipidsĀ
Include a diverse group of compounds such as fats, oil, waxes, phospholipids and steroids (nonpolar in nature)
Nonpolar molecules are āwater-fearingā (hydrophobic) or insoluble in water
Lipids have important roles in storing energy and building cell membranes throughout the body
Ā Ā Ā ProteinsĀ
One of the most abundant organic molecules in living systems and have a diverse range of functions of all macromoleculesĀ
They can be structural, regulatory, contractile or protective
They may serve in transport, storage or membranes or they may be toxins or enzymes
Each cell in a living system may contain thousands of proteins with unique functions
Their structures and functions vary greatlyĀ
Ā Ā Ā EnzymesĀ
Produced by living cells, speed up biochemical reactions (ex. digestion) and are usually complex proteinsĀ
Each one has specific shapes or formations based on how itās usedĀ
They may breakdown, rearrange or synthesize reactionsĀ
Ā Ā Ā ProteinsĀ
Have different shapes and molecular weightsĀ
Proteins shapes are critical to its functions and many different types of chemical bonds maintain this shapeĀ
Protein can denature when the temperature is changed, pH or exposure to chemicals (permanent and can cause it to lose function)
All proteins are made of different arrangements of the same 20 types of amino acids (amino acids are units that make up proteins)
Ten of these are considered essential to humans because the human body canāt produce them and are gained from their diet
The sequence and number of amino acids determines the proteinās shape, size, and functionĀ
Nucleic acidsĀ
Are the most important macromolecules for continuing lifeĀ
They carry the genetic blueprint of a cell and carry instructions for functioning cellsĀ
2 main types of nucleic acids
Deoxyribonucleic acid (DNA)
Genetic material found in all living organismsĀ
Controls all cellular activities by turning āonā or āoffā
Has a double helix structure
Native DNA is an antiparallel double helix. The phosphate backbone (indicated by the curvy lines) is on the outside and the base is on the inside. Each base from one strand interacts via hydrogen bonding with a base from the opposing strand.Ā
Ribonucleic acid (RNA)
Mostly involved in protein synthesisĀ
Biological organizationĀ
All living things are made of cellsĀ
The cell itself is the smallest basic unit of structure and function in living organismsĀ
In most organisms, cells have organelles that give specific functions for the cell
Properties of living organismsĀ
All are highly organized
All require energy for maintenance and growth
All grow over time and respond to their environment
All organisms adapt to the environment and all reproduce contributing genes to the next generation
Some organisms consist of a single cell and others are multicellular
Organisms are individual living entitiesĀ
Ex. each tree in a forest is an organismĀ
Ā Ā Ā Population
All individuals of a species living within one specific areaĀ
These vary based on a number of factorsĀ
Seasonal and yearly changes in the environmentĀ
Natural disasters (forest fires, volcanic eruptions)
Competition for resources (between species)
Ā Ā Ā CommunityĀ
The sum of populations inhabiting the same areaĀ
Ex.Ā
All trees, insects, and other populations in a forest form the forestās community (the forest is an ecosystem)Ā
Ā Ā Ā EcosystemĀ
Consists of all living things in a particular area together with abiotic, non-living parts of that environment (nitrogen in the soil or rainwater)
Ā Ā Ā BiosphereĀ
Collection of all ecosystems and represents the zones of life on earth
Land
Water
Atmosphere (to a certain extent)Ā
Chapter 1: Introduction to Environmental Sciences (Part 1)
The Chemical and Biological Foundations of LifeĀ
Some of the most abundant elements in living organisms
Carbon
Hydrogen
NitrogenĀ
Oxygen
Sulfur
PhosphorusĀ
These elements above create fundamental components of living matter;
Nucleic acid
Proteins
Carbohydrates
Lipids
The building blocks which are very important for unique structures of atoms that make up moleculesĀ
These allow the formation of cells, tissues, organ systems, and entire organisms
Life is made up of matter
The matter is any sort of substance that uses up space and has mass
Elements are unique forms of matter with very specific properties (chemical and physical)
These can not be broken down into any smaller substances
There are 118 chemical elements 92 occur naturally
The remaining 26 elements are synthesized in laboratories and are unstableĀ
The 5 elements common to living organisms are
Oxygen (O)
Carbon (C)
Hydrogen (H)
Nitrogen (N)
Phosphorus (P)
In a world where non-living organisms reside elements are found in different proportionsĀ
Some elements are common to living organisms and are rare on the earth as a wholeĀ
Ex.Ā
The atmosphere is rich in nitrogen and oxygen but contains little carbon and hydrogen whilst the earthās crust does contain oxygen and small amounts of hydrogen it has little nitrogen and carbonĀ
Despite all the differences, all elements and chemical reactions between them obey the same chemical and physical laws where they are a part of the living or non-living worldĀ
Chart of the approximate percentage of elements in living organisms (bacteria, humans) compared to no living woldĀ
(trace = less than 1%)
ElementsĀ | BiosphereĀ | AtmosphereĀ | LithosphereĀ |
OxygenĀ | 65% | 21% | 46% |
CarbonĀ | 18% | TraceĀ | TraceĀ |
HydrogenĀ | 10% | TraceĀ | TraceĀ |
NitrogenĀ | 3% | 78% | TraceĀ |
PhosphorusĀ | TraceĀ | TraceĀ | >30% |
The Structure of an AtomĀ
Atoms are the smallest unit of matter that retains all the chemical properties found of an elementĀ
Ex.Ā
One gold atom has all of the properties of gold in that it is a sold metal at room temperature. One gold coin is simply a very large number of golf atoms molded into the shape of a coin and containing small amounts of other elements known as impurities.Ā
Gold atoms canāt be broken down into anything smaller whilst retaining the properties (of gold)
Atoms are composed of 2 regions
Nucleus - the center of the atom and which contains the protons and neutrons
Outermost - holds its elections in orbit around the nucleusĀ
Atoms contain protons, neutrons and electrons among other subatomic particlesĀ
The only exception is hydrogen which is only made up of one proton and one electron with no neutrons
Here is a simple diagram of an atom
They have protons and neutrons in the nucleus and electrons surrounding the nucleusĀ
Protons and neutrons have approx. the same mass about 1.67(10-24)Ā
Scientists define this about of mass as one atomic mass unit (AMU)
Although they do have different electric charges
Protons are positively chargedĀ
Neutrons are negativelyĀ
Therefore the number of neutrons in an atom does contribute to its mass but not its chargeĀ
Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Ā Charge Ā Ā Ā Ā Ā Mass (AMU) Ā Ā Ā Location in an atomĀ | |||
ProtonĀ | +1 | 1 | NucleusĀ |
NeutronĀ | 0 | 1 | NucleusĀ |
ElectronĀ | -1 | 0 | OrbitalsĀ |
Electrons are much smaller in mass than protons
Weighing online 9.11(10-28) grams (or 1/1800)AMU
They donāt really contribute to the elements overall massĀ
Electrons contribute a lot towards the charge of the atomĀ
Each electron has a negative charge which is equal to the positive charge of a proton
In neutral atoms (uncharged) the number of electrons orbiting the nucleus equal to the number of protons in the nucleus
In such atoms, positive and negative charged cancel each other out which can lead to an atom with no net chargeĀ
Protons neutrons and electrons are mostly empty space which is 99%
Electrons that surround all atoms are negatively charged and negative charges repel each otherĀ
When atoms gain or lose electrons, ions are formedĀ
These are charged forms of atomsĀ
Positive ions (sodium Na+) lose one or more electronsĀ
Negatively charged ions (chloride (C1-), gain one or more electronsĀ
MoleculesĀ
These are formed when two or more atoms join together through chemical bonds to form a unit of matterĀ
Ex.Ā
CO2Ā is a molecule because it is made up of one carbon atoms and 2 oxygen atomsĀ
Some ions molecules are charged due to the ions they containĀ
Ex.Ā
Nitrate (NO3-) - common source for plants
It contains one nitrogen atom and three oxygen atoms and has an overallĀ
Ā charge of negative oneĀ
IsotopesĀThese are different forms of an element that have the same number of protons but different Ā number of neutrons
Elements such as carbon, potassium and uranium have naturally occurring isotopesĀ
Carbon-12 contains six protons, six neutrons and six electrons, therefore its mass number is 12 (six protons + six neutrons)Ā
These are alternate forms of carbon are isotopesĀ
Radioisotopes/ radioactive isotopesĀ
emit neutrons, protons, and electrons and attain more stable atomic configurations (lower level of potential energy)
Radioactive decay describe the energy loss that occurs when an unstable atomās nucleus release radiationĀ
Ex.Carbon-14 losing neutrons to become carbon-12
CarbonĀ
The basic functional unit of life is a cellĀ
All organisms are made up of one or more cells
MacromoleculesĀ
Cells are made of many complex moleculesĀ
Proteins
Nucleic acids (RNA and DNA)
CarbohydratesĀ
LipidsĀ
These are a subset of organic molecules that are very important for lifeĀ
A fundamental component of all macromolecules is carbonĀ
Carbon has unique properties that allow it to form covalent bonds with as many as four different atomsĀ
Carbon is also a versatile element for basic structural components of macromoleculesĀ
HydrocarbonsĀ
These are organic molecules that consist entirely of carbon and hydrogenĀ
Ex.Ā
Methane (CH4) - these covalent bonds between atoms in hydrocarbons store great amounts of energy and is released when molecules are oxidized (burned) methane is an excellent fuel and is also the simplest hydrocarbon moleculeĀ
This is a carbon molecule that shows a carbon atom in the middle and four hydrogen atoms (different) surrounding it.Ā
Methane has a tetrahedral geometry with four hydrogen atoms spaced 109.5Ā° apart.Ā
This three-dimensional shape of macromolecules is critical to how they function.
Hydrocarbons may exist as linear carbon chains, carbon rings and combinations of both
Biological molecules
Life on earth is made of four primary major classes of biological molecules (biomolecules)Ā
Carbohydrates
Lipids
Proteins
Nucleic acidsĀ
CarbohydratesĀ
One type of macromolecule (especially when it comes to what we eat)
Essential to our diet (grains, fruits and vegetables are all natural sources of carbohydrates)Ā
They provide energy to our bodies (mainly through glucose)Ā
Glucose is a simple sugar that is a component of starch and an ingredient that is common in many foods
Carbohydrates have important functions in humans, animals and plants
Its formula - (CH2O)nĀ -Ā nĀ is the number of carbons in the moleculeĀ
Ratio form - 1:2:1 (carbon to hydrogen to oxygen)
This formula explains the origin of the term ācarbohydratesā
āCarboā the components of carbon
āHydrateā the components of waterĀ
GlucoseĀ
The chemical formula for glucose is C6H12O6
During cellular respiration, energy is released from glucoseĀ
Help make adenosine triphosphate (ATP)
Plants synthesize glucose using carbon dioxide and waterĀ
In turn, glucose is required for energy for the plantĀ
The excess is stored as starch that is a breakdown of larger molecules by cells (catabolized)Ā
By humans and other animals that feed on plantsĀ
The starch is stored in different parts of the plant including roots and seeds
The starch in the seeds provides food for the embryo as it germinates and can provide food for animals and humans
LipidsĀ
Include a diverse group of compounds such as fats, oil, waxes, phospholipids and steroids (nonpolar in nature)
Nonpolar molecules are āwater-fearingā (hydrophobic) or insoluble in water
Lipids have important roles in storing energy and building cell membranes throughout the body
Ā Ā Ā ProteinsĀ
One of the most abundant organic molecules in living systems and have a diverse range of functions of all macromoleculesĀ
They can be structural, regulatory, contractile or protective
They may serve in transport, storage or membranes or they may be toxins or enzymes
Each cell in a living system may contain thousands of proteins with unique functions
Their structures and functions vary greatlyĀ
Ā Ā Ā EnzymesĀ
Produced by living cells, speed up biochemical reactions (ex. digestion) and are usually complex proteinsĀ
Each one has specific shapes or formations based on how itās usedĀ
They may breakdown, rearrange or synthesize reactionsĀ
Ā Ā Ā ProteinsĀ
Have different shapes and molecular weightsĀ
Proteins shapes are critical to its functions and many different types of chemical bonds maintain this shapeĀ
Protein can denature when the temperature is changed, pH or exposure to chemicals (permanent and can cause it to lose function)
All proteins are made of different arrangements of the same 20 types of amino acids (amino acids are units that make up proteins)
Ten of these are considered essential to humans because the human body canāt produce them and are gained from their diet
The sequence and number of amino acids determines the proteinās shape, size, and functionĀ
Nucleic acidsĀ
Are the most important macromolecules for continuing lifeĀ
They carry the genetic blueprint of a cell and carry instructions for functioning cellsĀ
2 main types of nucleic acids
Deoxyribonucleic acid (DNA)
Genetic material found in all living organismsĀ
Controls all cellular activities by turning āonā or āoffā
Has a double helix structure
Native DNA is an antiparallel double helix. The phosphate backbone (indicated by the curvy lines) is on the outside and the base is on the inside. Each base from one strand interacts via hydrogen bonding with a base from the opposing strand.Ā
Ribonucleic acid (RNA)
Mostly involved in protein synthesisĀ
Biological organizationĀ
All living things are made of cellsĀ
The cell itself is the smallest basic unit of structure and function in living organismsĀ
In most organisms, cells have organelles that give specific functions for the cell
Properties of living organismsĀ
All are highly organized
All require energy for maintenance and growth
All grow over time and respond to their environment
All organisms adapt to the environment and all reproduce contributing genes to the next generation
Some organisms consist of a single cell and others are multicellular
Organisms are individual living entitiesĀ
Ex. each tree in a forest is an organismĀ
Ā Ā Ā Population
All individuals of a species living within one specific areaĀ
These vary based on a number of factorsĀ
Seasonal and yearly changes in the environmentĀ
Natural disasters (forest fires, volcanic eruptions)
Competition for resources (between species)
Ā Ā Ā CommunityĀ
The sum of populations inhabiting the same areaĀ
Ex.Ā
All trees, insects, and other populations in a forest form the forestās community (the forest is an ecosystem)Ā
Ā Ā Ā EcosystemĀ
Consists of all living things in a particular area together with abiotic, non-living parts of that environment (nitrogen in the soil or rainwater)
Ā Ā Ā BiosphereĀ
Collection of all ecosystems and represents the zones of life on earth
Land
Water
Atmosphere (to a certain extent)Ā